Name
   - Mouse to human (OMA) ortholog ID mapping

Version
   - 1.0.36

Created on
  - 2020-01-28T14:43:50.052305

Modified on
   - 2020-01-31T19:30:30.213132

Created by
   -  [evanh@gwmail.gwu.edu]

Authors
   - 

Checksum
   - daa72351613e95b798841f48aacd144a

Usability Domain
   - List of one to one orthologous Ensembl gene identifiers and HGNC/MGI gene symbols for humans and mice.

Description Domain
   Keywords
   - mouse
   - human
   - ortholog
   - gene symbol
   - mapping

   Pipeline Steps
   - Step-1: A list of Ensembl gene identifiers was retrieved from the Orthologous MAtrix browser.
   - Step-2: R commands were used to filter the list for one to one orthologs, map HGNC/MGI symbols to Ensembl gene identifiers with R packages org.Mm.eg.db and org.Hs.eg.db, and organize the final mapping file.

Execution Domain
   Scripts

   Software Prerequisites

I/O Domain
   Output Subdomain
      Name: mouse_to_human_OMA_mapping.csv
      URI: http://data.oncomx.org/ln2wwwdata/reviewed/mouse_to_human_OMA_mapping.csv
      Name: mouse_to_human_OMA_mapping.stat.csv
      URI: http://data.oncomx.org/ln2wwwdata/reviewed/mouse_to_human_OMA_mapping.stat.csv

Fields
      Name: "mouse_ensembl_gene_id"
     Description: "Mouse Ensembl gene identifier"
      Unique Values: "15903"
      Name: "human_ensembl_gene_id"
     Description: "Human Ensembl gene identifier"
      Unique Values: "15903"
      Name: "human_uniprotkb_ac"
     Description: "Accession assigned to the human protein in the UniProtKB database"
      Unique Values: "15689"
      Name: "gene_symbol"
     Description: "Official gene name/symbol assigned to the gene. Human gene name/symbol are approved by the HUGO Gene Nomenclature Committee (HGNC) and mouse gene name are approved by the Mouse Genome Informatics (MGI)
      Unique Values: "15824"
      Name: "mouse_uniprotkb_ac"
     Description: "Accession assigned to the mouse protein in the UniProtKB database"
      Unique Values: "15708"
      Name: "human_ortholog_symbol"
     Description: "Human HGNC gene symbol mapped from human Ensembl gene identifier listed as orthologous to mouse Ensembl gene identifier by Orthologous MAtrix (OMA)"
      Unique Values: "15798"